YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113460644, gi...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLILLRAVVV IFCCILICVV GSLYSLIRFK NPSNVGVMAR WFGRLYPFFG LKVEHRFPEN  60
   61 VDSIGRCIYI GNHQNNYDMV TVSAMVRPRT VSVGKKSLVW IPFFGLLYWA TGNILLDREN 120
  121 RSKAHNTINQ LARRINEDNL SVWMFPEGTR SRGRGLLPFK MGAFYAAITA GVPIVPVVCS 180
  181 TTHNRIDLNR WDNGKVICEM MSPVDTSNYT KDNVRELAEY CHQIMQQRIA ELDAEIQQQS 240
  241 V

Type	Start	End	Confidence
Cytoplasmic	1	6	0.44
Transmembrane Helix	7	27	0.75
Non-Cytoplasmic	28	97	0.67
Transmembrane Helix	98	116	0.57
Cytoplasmic	117	160	0.43
Transmembrane Helix	161	179	0.58
Non-Cytoplasmic	180	241	0.63