YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23473354, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLATILGIV ISFGLVLAGI LEGGSIMIFV SIPSLLIVVG GTIGATLVNY PLATVLGVMG  60
   61 VIKKTFNASA QSPSSIIEQF MDFANRARRE GILSLEPVIK EVEDAYLRKG LQLTVDGLEP 120
  121 QAIQEILETE ISSLESRHET GVEIINAMGA YAPALGMIGT VIGLVQMLQT MSDPSSIGPA 180
  181 MAVALITTFY GAVLANLVFI PMAGKLKMRS REEVTMREMQ MEGILAISRG ENPRIIQEKL 240
  241 SSYQPPKERK ADAG

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	30	0.88
Non-Cytoplasmic	31	35	0.67
Transmembrane Helix	36	62	0.79
Cytoplasmic	63	146	0.97
Transmembrane Helix	147	168	0.89
Non-Cytoplasmic	169	179	0.81
Transmembrane Helix	180	200	0.95
Cytoplasmic	201	254	0.97