YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78356230, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQVLTGTTA AQEEKSHTPL VEAMLRLHKN RTAMAGLVIV GIFVFLALFG PLIAPHDPLE  60
   61 QSLYNKLKPP VWDARGSMSF FLGTDDFGRD LLSRLIHGAR ISMLVGVVSV SISLFFGTIA 120
  121 GAVAGFYRGW VDVIIMRVMD ILLAFPSILL AIVIVAFLGP SLENAMIAIG IVSIPRYARI 180
  181 VRGSVLEEYS KDYVQAARAL GASDFRLIFQ HILPNCLAPL IVQTTLGFAS AILEAAALSF 240
  241 LGLGAQPPTP EWGAMLAGGR ALILRAWWVV TFPGITILLA VLGFNLLGDG LRDALDPRLR 300
  301 D

Type	Start	End	Confidence
Cytoplasmic	1	32	0.95
Transmembrane Helix	33	54	0.94
Non-Cytoplasmic	55	102	0.83
Transmembrane Helix	103	127	0.86
Cytoplasmic	128	137	0.64
Transmembrane Helix	138	160	0.86
Non-Cytoplasmic	161	219	0.59
Transmembrane Helix	220	245	0.79
Cytoplasmic	246	263	0.56
Transmembrane Helix	264	287	0.88
Non-Cytoplasmic	288	301	0.60