YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78220238, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.93
Transmembrane Helix	15	34	0.95
Non-Cytoplasmic	35	43	0.83
Transmembrane Helix	44	66	0.86
Cytoplasmic	67	82	0.92
Transmembrane Helix	83	106	0.87
Non-Cytoplasmic	107	111	0.83
Transmembrane Helix	112	134	0.89
Cytoplasmic	135	144	0.80
Transmembrane Helix	145	165	0.90
Non-Cytoplasmic	166	188	0.77
Transmembrane Helix	189	209	0.87
Cytoplasmic	210	220	0.95
Transmembrane Helix	221	243	0.88
Non-Cytoplasmic	244	255	0.88
Transmembrane Helix	256	278	0.90
Cytoplasmic	279	288	0.91
Transmembrane Helix	289	310	0.91
Non-Cytoplasmic	311	317	0.75
Transmembrane Helix	318	339	0.93
Cytoplasmic	340	362	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHESVVKKLS FLDRYLTLWI FLAMFVGVGG GYLYPDVKNV INSFQVGTTN IPIAIGLILM  60
   61 MYPPLAKVKY EQLGQVFRNF KVLALSLVQN WIIGPILMFG LAITFLSGYH EYMVGLILIG 120
  121 LARCIAMVIV WNDLAKGDTE YCAGLVAFNS IFQVIFFSVY AYLFITVLPG WFGLKGVVVD 180
  181 ISIGQIAESV FIYLGIPFIA GMLTRFMGLK LKGQEWYENT FIPRISPLTL VFLLFTILVM 240
  241 FSLKGEKVIQ LPFDVIRIAI PLTIYFLVMF LVSFYLSYKA DATYEQATTL SFTAASNNFE 300
  301 LAIAVAIAVF GINSGEAFAA VIGPLVEVPV LIALVNVALH FKRKYFPKAV ETIAGVCHVK 360
  361 CD