YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|189091892
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.98
Transmembrane Helix	28	50	0.92
Cytoplasmic	51	58	0.81
Transmembrane Helix	59	79	0.92
Non-Cytoplasmic	80	94	0.83
Transmembrane Helix	95	116	0.91
Cytoplasmic	117	241	0.99
Transmembrane Helix	242	263	0.91
Non-Cytoplasmic	264	275	0.81
Transmembrane Helix	276	297	0.73
Cytoplasmic	298	316	0.72
Transmembrane Helix	317	339	0.79
Non-Cytoplasmic	340	355	0.83
Transmembrane Helix	356	376	0.89
Cytoplasmic	377	406	0.95
Transmembrane Helix	407	426	0.89
Non-Cytoplasmic	427	441	0.81
Transmembrane Helix	442	462	0.83
Cytoplasmic	463	476	0.81
Transmembrane Helix	477	494	0.93
Non-Cytoplasmic	495	509	0.86
Transmembrane Helix	510	532	0.89
Cytoplasmic	533	551	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMTEADKPL PEDQYPPTYF AHPDHKAAIY GHIILMVLGW MFVLPAAVML SLARSRYTLY  60
   61 AQFSFLALNT GGMLLGIVYN ASTPDLYPNN AHHKIGWIVT IAAVSQVAIG LLARVAGMMK 120
  121 RGELGNVRER QGFIPVSTEA IQAHESGFPG PYRRFSHDSG QGTELGSETL RSHSISSPPT 180
  181 SPTIPSHLAH KEYQHDDGFE DEDLEHKVPS LKKTGKALSM VAKVAGKISD RFWKILMFAY 240
  241 NFVNRTILLL SFIALCTGVT TYARFFEGNG IFSGLAHWIK GGVFVWLGWW TLARWAGSFG 300
  301 DLGWAWNVRP KKAGQKWCPS AEFVESALIF FYGSTNVFLE HLGNWGGEWS SQDLEHVSIT 360
  361 VLFIGGGLCG MLIESIRIRN LLNFHVVETA QEDHIDRDQL REPETYAFSL NPIPALVIIL 420
  421 TGLMMSSHTQ ESMISTMVHK QWGDLITAAS LSRGLSYVVM YLKPPKTIYP SRPPTELLTA 480
  481 FGLTAGGFMF MASSSDTVDG MIHYQLNPMF MYTVSMGFVA LMMAWVILLV ALKGWAEKRE 540
  541 AAGRLTGKAF A