YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10047443
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEHVVKDAV NIGAVVQGTL LLLTGTLMLI LLHRIFGVKN WRNQSALPGP GWWLGLGPVL  60
   61 SYSRFLWMGI GTACNYYNEK YGSIARVWIN GEETVILSKS SAVYHVLKSN NYTGRFASAK 120
  121 GLQCIGMFKQ GIIFNSNIAK WKKVRTYFTR ALTGPGLQKS VEVCVSATNR QLDVLQEFTD 180
  181 ASGHVDVLNL LRCIVVDVSN RLFLRIPLNE KELLIKIHRY FSTWQTVLIQ PDIFFKLDFV 240
  241 YRKYHLAAKE LQDEMGKLVE QKRQAINNTE KLDEMDFATE LIFAQNHDEL SVDDVRQCVL 300
  301 EMVIAAPDTL SISLFFMLLL LKQNSAVEEQ IVQEIQSQIG SRDVESADLQ KLNVLERFIK 360
  361 ESLRYHPVVD FIMRQSLEDD YIDGYRVAKG TNLILNIGRM HKTEFFKKPN EFSLENFENT 420
  421 VPSRYFQPFG CGPRACVGKH IAMVMTKAIL VTMLSRFTVC PRHGCTISTI RQTNNLSMQP 480
  481 VEEDPDCLAM RFIPRAQNSN GETADNRTSK E

Type	Start	End	Confidence
Cytoplasmic	1	11	0.57
Transmembrane Helix	12	36	0.83
Non-Cytoplasmic	37	511	0.59