YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53688967
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKQVFRVGF SLLMAFWLAF GTLTQPAVAL TGEQKLVSEV WRIVNRTYLD ETFNHQNWAA  60
   61 VRQKVLEKPL TDSNASYAAI GKMLKSLDDP FTRFLDPEQY RSLKVNTSGE LTGVGLQIVL 120
  121 NPETGKLEVV APIAGSPADK AGIRPRDRIL KIEGVSTKNL TLDEAATKMR GPSGSLVTLL 180
  181 IERDGEPETE IKLTRDRIAL NPVVSELRVS AEGTSIGYLR LTQFNANASM ELAHAISSLE 240
  241 KKGAAAYILD LRNNPGGLLQ SGIEIARQWL DSGTIVYTVN RQGIQGSFEA LGPALTNDPL 300
  301 VILVNQGTAS ASEILAGALQ DNGRAQLVGE TTFGKGLIQS LFELSDGSGL AVTIAKYETP 360
  361 QHRDINKLGI KPDKVISQDP INREQIGTEA DLQYQAAVEL LKKDLVVAGK A

Type	Start	End	Confidence
Signal Peptide	1	29	0.97
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	411	0.99