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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GCSP_NOSP7
Protein type: Transmembrane
Type Confidence: 0.69
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLNAPILKS NEQQVLNQKS QKLSSFAPRH IGPNSDDIQQ MLKVLGFPSL DALIDKTVPQ  60
   61 TIRLKQPLKL PEAESEYAAL ASLKKIAAKN QVFRSYIGMG YYDTITPLVI GRNILENPGW 120
  121 YTAYTPYQPE IAQGRLEALL NFQTLIIDLT GLEIANASLL DEATAAAEAM SLSYGVSKNQ 180
  181 ANAYFVSHDC HPQTIDVLQT RAKPLGINII VGDHQTFDFD RAIFGAVLQY PASDGTIYDY 240
  241 RAFIEKAHAK GALVTVAADP LSLTLLTPPG EFGADIAVGS TQRFGIPLGF GGPHAAYFAT 300
  301 KEEYKRLVPG RIVGVSKDAQ GKPALRLALQ TREQHIRREK ATSNICTAQV LLAVMASMYA 360
  361 VYHGPDGLKQ IAENIHQLTL MLAAGLKHLG YKISSEHFFD TLRVELGTRS LEVILEACQA 420
  421 RNINLRIFDD TAVGISVDET TTADDLIELF EIFAAPDSLL FGFKEIGDLI AARRKSSLQN 480
  481 STFARTSNYL THPVFNRYHS ETELLRYLHK LESKDLSLTT SMIPLGSCTM KLNATAEMIP 540
  541 VTWEEFGKIH PFAPASQTQG YQILFQQLEA WLAEITGFAG ISLQPNAGSQ GEYAGLLVIR 600
  601 QYHENRGEAH RNVCLIPTSA HGTNPASAVM CGMKVVAVAC DSQGNIDVDD LKAKAEKHSH 660
  661 ELAALMVTYP STHGVFEEPI QEICAVVHSH GGQVYMDGAN MNAQVGICRP GDIGADVCHL 720
  721 NLHKTFCIPH GGGGPGMGPI GVASHLVPFL PGHPVVTIND STQHSHIGAV AAAPWGSASI 780
  781 LVISWMYIAM MGADGLTQAT KVAILNANYI AKKLESYYPV LYQGKNGLVA HECILDLRSL 840
  841 KKSAAIEIDD VAKRLMDYGF HAPTVSWPVG GTIMVEPTES ESKQELDRFC DALIAIRQEI 900
  901 AEIEVGKVDA QDNVLKNAPH TAESLITGEW QHPYSREQAA YPAPWTREYK FWPAVGRIDA 960
  961 AFGDRNFVCS CLPMDAYSS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle