YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186685052, gi...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAIALGGV FLIGTLWYSL VEGWSWEDAA YMTVITLATV GYGETHPLGS RGRLFTIALI  60
   61 LLGVVNIGYI VNRFTEAIIQ GYFQQGIRLQ QQRRLMESLT EHYIICGFSR TGRQIAKEFR 120
  121 AEGVPFVVID SDMESVQRAQ TEGYTAFQGD ATLDDTLLKV GIERAICIVA ALPSDAENLY 180
  181 IVLSAKTLNS GIRVIARAST EEALQKLRRG GADEVISPYI TGGKRMAAAA LRPQVLDFVD 240
  241 GILTGADRQL YMEEFLLDPA FCPFVGQSLQ KARLRSQSGA LVLAIRRADG ALIGGPTGDT 300
  301 VLMSGDRLIG MGTAEQLRSL NQILGPINSK KLRRPKNS

Type	Start	End	Confidence
Cytoplasmic	1	4	0.55
Transmembrane Helix	5	21	0.64
Non-Cytoplasmic	22	28	0.54
Transmembrane Helix	29	43	0.48
Cytoplasmic	44	53	0.43
Transmembrane Helix	54	71	0.80
Non-Cytoplasmic	72	338	0.74