YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NDHK_NOSP7
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLNSNLTTQ DKQRIINPIE RTNVTQDLSE NVILTTVDDL YDWARLSSLW PLLFGTACCF  60
   61 IEFAALIGSR FDFDRFGLIP RSSPRQADLI ITAGTITMKM APQLVRLYEQ MPEPKYVIAM 120
  121 GACTITGGMF SVDSPTAVRG VDKLIPVDVY LPGCPPRPEA IIDAIIKLRK KISNESIQER 180
  181 DKIKQTHRYY STTHNLKPVE EILTGKYLQS DTRSAPPKEL AEAIGMPIPP ALLTEKAQKE 240
  241 EQTRG

Type	Start	End	Confidence
Cytoplasmic	1	48	0.58
Transmembrane Helix	49	68	0.83
Non-Cytoplasmic	69	245	0.63