YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186468034, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.90
Transmembrane Helix	27	44	0.83
Non-Cytoplasmic	45	51	0.71
Transmembrane Helix	52	74	0.81
Cytoplasmic	75	94	0.90
Transmembrane Helix	95	116	0.86
Non-Cytoplasmic	117	120	0.67
Transmembrane Helix	121	142	0.88
Cytoplasmic	143	149	0.85
Transmembrane Helix	150	169	0.92
Non-Cytoplasmic	170	175	0.73
Transmembrane Helix	176	196	0.89
Cytoplasmic	197	204	0.77
Transmembrane Helix	205	225	0.56
Non-Cytoplasmic	226	235	0.47
Transmembrane Helix	236	261	0.83
Cytoplasmic	262	278	0.86
Transmembrane Helix	279	301	0.88
Non-Cytoplasmic	302	317	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIETNVSRHH ETFLQVIQSY YQLTKPRIIP LLLITTAGSM WIAAKGEVDP LLLLVTLTGG  60
   61 TLAAASAQTI NCVYDRDIDY DMERTRHRPI PSGKVQPRDA LIFAIALATI SFTLLAVFAN 120
  121 LLAALLAFSG IVFYILVYTH WLKRHTPQNI VVGGAAGAIP ALVGWAAVTG TLSWSAWLIF 180
  181 AIVFLWTPPH FWALALMIKD DYAKVGIPML PVIEGTTATV KQIWYYTLVT VFATVLLVYP 240
  241 LGASGILYAA IALILGGLFI HKSWRLLQNP EDRAVAKELF LFSISYMMLL CLGMVVDSLP 300
  301 VTHNLISAVS NHLHFIG