YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186685548, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPITFEILI ILVLIIANGV FSMSEMAIVS ARKVRLQQLA NQGDAKARAA LKLAESPNHF  60
   61 LSTVQVGISL IGILTGAFGG ATIANRLAVY VKLVPLLAPY SEPISFGIVV LIITYLSLIV 120
  121 GELVPKRLAL NNPERIASIV AIPMQALAAI ASPVVYLLST STDLILRMLG ITASTEPQVT 180
  181 EEEIKILIEQ GTEAGTFEEA EQDMVERVFR LGDRPVSYLM TPRPDIVWLD LEDTAEENRQ 240
  241 KMVDSAYSRY PVCQAGLDNV LGVIPVTDLL ARSFRGEPLD LTVGLRQPVF VPESTRGLKV 300
  301 LELFKQTITH MALVVDEYGV IQGLVTLNDI MSEIVGDVPS TDGQDQPQAV QREDGSWLLD 360
  361 GMLPVEEFLE LFGMEEWESE ERGSYQTLGG FVITHLGRIP AAADHFEWQS MRIEVMDMDG 420
  421 NRVDKVLVVP KATKSADTKK SD

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.83
Transmembrane Helix	8	29	0.92
Cytoplasmic	30	60	0.90
Transmembrane Helix	61	84	0.85
Non-Cytoplasmic	85	102	0.82
Transmembrane Helix	103	124	0.88
Cytoplasmic	125	135	0.89
Transmembrane Helix	136	158	0.89
Non-Cytoplasmic	159	442	0.95