YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186468796, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKICIVGAGA IGGYLGAKLA LAGEAVTLIA RGSHLEAIQK NGLKLLMADG SSQIATPLAT  60
   61 SNIQEAGPQD VVILTVKAHS VPAIAPFLPA LYDSHTMVVT AQNGVPWWYF RQHGSEYEGT 120
  121 RIQSVDPDGI IEASIGAERV IGCVVYPATE IVEPGVIKHI EGDRFTLGEI DGSKTERIQL 180
  181 LAQTLKHAGF KAPIRNQIRT EIWIKLWGNV AFNPISALTG ATLEDICRYP LTRELARLMM 240
  241 SETQAIAENL GIKFGITLEQ RINGAENVGA HKTSMLQDIE AARATEIDAI VGAVAELGKL 300
  301 TQIPTPYIDA IYASVKLLEA TKVGI

Type	Start	End	Confidence
Signal Peptide	1	22	0.65
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	325	0.99