YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186464154, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRKLRRLPK IVNRLYKKDE FYHQPGTIPG TIFIHEDSPP PIIFLIDYNQ TNFIREQIAT  60
   61 PEECIPYLEM ESISWVDVQG LGSQDILQRL GHVFELHPLV LEDIVNVPER PKTEDYEDQL 120
  121 LFIARMVVPK EISCGFHSEQ VSLILGKNYL LTVQEEPEHD CFEAVRSRIE KNKGIIRKQG 180
  181 ADYLAYAVLD AIIDGFFPVL ELYGERIEEL EEEVIVKPTP QTLQNIYQIR RELLQLRRAI 240
  241 WPQRDAINSL IRDAPDLISE EVRIYLRDCY DHTVQVMDMV ETYRELASGL MDVYLSAVSN 300
  301 KMNEIMKVLT VVSTIFIPLT FVAGIYGMNF NTEKSPYNMP ELDWYWGYPL CLAVMAAIAL 360
  361 GLLFFFWQRG WLQNSVTIKR N

Type	Start	End	Confidence
Cytoplasmic	1	307	0.96
Transmembrane Helix	308	328	0.93
Non-Cytoplasmic	329	344	0.92
Transmembrane Helix	345	367	0.94
Cytoplasmic	368	381	0.92