YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186467907, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVDKPSFHS SASDTHTAKP KEQKSWVPIV LIGIAIAYLA LVQYIPAINV FIQAFSKGFG  60
   61 PFLSNLTRPA FLHAAWLTLL LAVISLPLNT IFGLCAAWAI ARHKFPGRAV VLSIIDLPFS 120
  121 ISPVVAGLMI VLLYGRNGWF GPWLQAHDIK IIFAFPGMVL ATAFVSMPFV AREVIPVLEE 180
  181 FGKDQEEAAR TLGAKDWQIF WRVTLPSIRW GLLYGLILTN ARAMGEFGAV SVVSGNIADQ 240
  241 TQSLPLFVED AYKQYETEAA FSAAVLLALL AVVTLVLKEI LERKTSIKDV E

Type	Start	End	Confidence
Cytoplasmic	1	25	0.99
Transmembrane Helix	26	48	0.89
Non-Cytoplasmic	49	73	0.87
Transmembrane Helix	74	100	0.85
Cytoplasmic	101	109	0.91
Transmembrane Helix	110	134	0.88
Non-Cytoplasmic	135	150	0.87
Transmembrane Helix	151	171	0.92
Cytoplasmic	172	206	0.88
Transmembrane Helix	207	225	0.75
Non-Cytoplasmic	226	258	0.85
Transmembrane Helix	259	277	0.95
Cytoplasmic	278	291	0.90