YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186682156, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTRKLRLG AFIQATGHHI SAWRHPDSQA DAGLNFEHYK EITQTAERGL FDAVFLADSP  60
   61 SLQDNSEPEV LKRNGKLAKF EPVTLFSALA PLTKHIGFVA TASTTYEEPY TLARKFASLD 120
  121 YLSNGRAAWN VVTTGNENAA GNFGLEHHPE HSQRYERAEE FVEVVKGLWD SWEDDAFIRD 180
  181 KESGVYFDPD KLHTLNYKGK HFSVQGPLNV GRPPQGYPVI VQAGASEVGR DLAAQTAEVI 240
  241 FTANQTLEDG QEFYADVKGR LAKYGRQLDD LKIMPGVFPV IGRTEEEAQE KYEFLQSLIH 300
  301 PSVAWGLLKT RYKGIDLSGY SLDDLAPPLP SDTNGGKSRL KLLTDLVNRG NLTLRQLYLS 360
  361 VATARGHRTI IGSPESIADQ LEEWFSNGAA DGFNIMPPIL PTGLDDFVNL VIPVLQKRGL 420
  421 FRTEYEGNTL RENLGLRRPG NGFAAKQANK SLVVV

Type	Start	End	Confidence
Signal Peptide	1	22	0.61
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	455	0.99