YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23126620
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	40	0.95
Non-Cytoplasmic	41	48	0.82
Transmembrane Helix	49	71	0.87
Cytoplasmic	72	91	0.87
Transmembrane Helix	92	111	0.96
Non-Cytoplasmic	112	117	0.84
Transmembrane Helix	118	139	0.91
Cytoplasmic	140	149	0.81
Transmembrane Helix	150	170	0.86
Non-Cytoplasmic	171	193	0.80
Transmembrane Helix	194	214	0.93
Cytoplasmic	215	229	0.91
Transmembrane Helix	230	253	0.82
Non-Cytoplasmic	254	262	0.81
Transmembrane Helix	263	283	0.95
Cytoplasmic	284	294	0.85
Transmembrane Helix	295	317	0.85
Non-Cytoplasmic	318	321	0.72
Transmembrane Helix	322	346	0.86
Cytoplasmic	347	358	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLIVMNKNT LKRLSFIDRF LTLWIFLAMA IGVGLGYFFP GVEAFINQFQ VGATNIPIAI  60
   61 GLILMMYPPL AKVRYEELGD VFRNGKILGV SLIQNWIIGP ILMFALAAIF LHNYPEYMTG 120
  121 LILIGLARCI AMVVVWSDLA RGNTEYTAGL VAFNSIFQVI FYSPYAWFFI TVLPPLFGLQ 180
  181 GSVVNVSIAE IAESVFIYLG IPFLAGFFTR FFLVKVKSKQ WYHEEFVPKI SPITLIALLF 240
  241 TIVVMFSLKG NLIVQIPLDV VKIAIPLIVY FIIMFLVSFY MAWRVKTDYS RAASVAFTSA 300
  301 GNNFELAIAV AIAVFGINSG VAFAAVVGPL VEVPVLIGLV NVAFWFEKRY FTTPKSRA