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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|53687593
Protein type: Transmembrane
Type Confidence: 0.55
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSNNKNSPN KGNLPLRLVL VLPFVLQIFA AVGLTGYLSL RNGQQAVNDL ASRLQREVSD  60
   61 RIDQHLDSYL NTARQLAEIN GDAIDLKLLD TQDLEQLGHF FWKQMQLYNV GYISFGSKIS 120
  121 EFASSGKFFD DGRITVSEVS QRRNGDRDEH LYNADAQGNR VSLAIVNKNY NFAKESWYAD 180
  181 TVKAGKPIWS KIYQWETSPE TLSVSANRPV YDRDKNLIGV IGIDQRLSQI SNFLRSLKAS 240
  241 PSAKTFILER NGLIVASSST EQPYKLINGK PKRLQASDSS DLLIRAATTH LIEHLGNFSN 300
  301 IKENQQLDFI LNHERQFVQV TPWRDEWGLD LLVVVAVPES DFMGQINANT HTTILLCLGA 360
  361 LTLATILGVY TSRWIARPIL HLSQASESIA AGELNQQVEI PSVNELGRLA QSFNRMAQQL 420
  421 RDSFTTIEQT NQQLAKTNEE LESRVEERTH ELKEAKLTAD AANHAKSDFL ANMSHELRTP 480
  481 LNGILGYAQI LARTASDEKQ QRGIDIIYQC GSHLLTLIND ILDLSKIEAG KLELQLVPFY 540
  541 LPAFLQSVVE ICRIKAEQKS IEFIYQPPEN SAMGIVADEK RLRQVLINLL GNAIKFTDKG 600
  601 SVTFRVEVLL GDITNLRFYI QDTGIGMSPQ QLEKIFLPFE QVGDSKRQSE GTGLGLAISQ 660
  661 RFVELMASKI QVESQLGVGS KFFFNIDCAI ATDWVQANSL TSSGRIIGYA GVGKTSVKEN 720
  721 RKKILIVDDR WENRSVIVNL LEPLGFEVIE ASNGQEGLEK ITRDRPDTII CDLAMPVMDG 780
  781 WEMLKQLRQS ETLRDAIVIV SSASVFENDR QKSLDAGGND FLAKPVQADE LYAVLAKQLQ 840
  841 LDWIYKDTNI KYPIDTAAST KTIVIPSSSD LKGLLEHVET GYFRGIREEL DRLAQLDEQY 900
  901 QPFIRELREL VKGFNIQTVR HFLQESINQS QESTKI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle