YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53687582
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQKEQGEWA FLGDPTEGAL LTLAGKAGIE KDQWNSKLPR VAEFPFSSER KRMSVISQVE  60
   61 GVATGDASSR GIDPAIAGFL QSESYLMFTK GSPELTLARS AQIHLGNHSV PLTEEQRQKI 120
  121 LAENDLMASK GLRVLGFAYK PLAEIPPEGS DEASEQGLVW LGLVGMLDAP RPEVRAAVQE 180
  181 CRDAGIRPVM ITGDHQLTAR AIATDLGIAQ EGDRVLTGQE LQRMTDQELE QNVDLVSIYA 240
  241 RVSPEHKLRI VQALQRRGRF VAMTGDGVND APALKQADIG IAMGITGTDV SKEASDMVLL 300
  301 DDNFATIVSA TKEGRVVYTN IRRFIKYILG SNIGEVLTIA AAPLIGLGGV PLTPLQILWM 360
  361 NLVTDGLPAL ALAVEPPEPD VMQRPPFSPR ESIFARGLGS YMIRIGIIFA IITIALMWWA 420
  421 YQHTHAAGYQ GDPETWKTMV FTTLCIAQMG HAIAIRSNNR LTIEMNPFSN IFVLAAVVVT 480
  481 TILQLMLVYV PPLRDFFGTH YLNMQELGVC IGFSALMFVW IEAEKIFLRI MGKKAV

Type	Start	End	Confidence
Cytoplasmic	1	327	0.61
Transmembrane Helix	328	350	0.71
Non-Cytoplasmic	351	354	0.45
Transmembrane Helix	355	374	0.55
Cytoplasmic	375	399	0.88
Transmembrane Helix	400	421	0.91
Non-Cytoplasmic	422	435	0.91
Transmembrane Helix	436	455	0.91
Cytoplasmic	456	467	0.85
Transmembrane Helix	468	490	0.90
Non-Cytoplasmic	491	501	0.84
Transmembrane Helix	502	521	0.92
Cytoplasmic	522	536	0.88