YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47197325
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARMNRYLPVA RQHFLAAIAS TSVVVKSISA LVVLLYLLSW AVSTPYSLGV TPGYLFPPNF  60
   61 WVWTLVTHGL VEQHVWGVAA NVGTVMACGR LLEPLWGALE LLIFFAVVNV SAGLLAGLSY 120
  121 LLTYVATFDL GYLFAVRIHG GAGFLGGVLV ALKQTMGDTT VLRVPQVRLK AAPALVLFLL 180
  181 ALLRLSGLLG SSAPLAAYSY GALSGWVYLR FYQKHSRGRG DMSDHFAFAS FFPEALQPPV 240
  241 GLLAGLVHSA LVKIKVCRKM VKRYDVGAPS SITISLPGTD PQDAERRRQL ALKALNERLK 300
  301 RVEDQSAWPS MDDEEDD

Type	Start	End	Confidence
Cytoplasmic	1	13	0.93
Transmembrane Helix	14	38	0.84
Non-Cytoplasmic	39	69	0.76
Transmembrane Helix	70	92	0.76
Cytoplasmic	93	100	0.79
Transmembrane Helix	101	123	0.90
Non-Cytoplasmic	124	132	0.80
Transmembrane Helix	133	153	0.91
Cytoplasmic	154	173	0.82
Transmembrane Helix	174	198	0.85
Non-Cytoplasmic	199	234	0.76
Transmembrane Helix	235	252	0.78
Cytoplasmic	253	317	0.95