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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|13492012
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRYLIKTLL QMNLFTDTIR DATNGTDLFF NISSIPSFNS SLLDWANFTG LNGSRPRLED  60
   61 AAPRIVEHPS DLIVSKGEPA TLNCKAEGRP TPMVEWYKDG ERVETDREDP RSHRMLLPSG 120
  121 SLFFLRIVHG RRSKPDEGVY VCVARNYLGE AVSRNASLEV AILRDDFRQT PSDVVVAAGE 180
  181 PAVMECIPPR GHPEPTISWK RNNVKVNDKD ERITIRGGKL MISNTRKSDA GMYVCVGTNM 240
  241 VGEKDSDPAE LVVFERPMFV RRPVNQVVLA DDTVDFQCEV QGDPAPTIRW KKEEGELPRG 300
  301 RFEIRADNSL RLTQVKAEDE GSYTCLSENS VGKAEASGSL QVHVPPQIVV RPRDQISAQG 360
  361 RTVTFLCGTK GNPPPAVFWQ KEGSQVLLFP SQPPSQSGRF SVSLSGELTI TDVHSEDSGY 420
  421 YICQAISVAG SILTKALLEV ESTPSDRIPP IIRQGPANQT LAPGTTAQLQ CHVMGNPLPS 480
  481 IQWERDGQRI LGIDERISLM ENGTLQITAL QETDSGAYTC VASSLSGETS WSGVLTVKES 540
  541 GGLSASPVSE PYQLPGPPQK PVVTDVTRNS VTLTWQPNAH EGGAAVTSYI IEAFSQSAGS 600
  601 TWQTVADFVK LEKHTVTGLS PNTIYLFIVR AVNAYGLSDP SPISEPVRTQ DVSPTGQGVD 660
  661 HRQVQRELGE MSVQLHEPVL LTASSVKISW NVDRQSQYIQ GYRLLYRPVG GSWSQQEVKG 720
  721 ATERSAVIAN LLKGTEYEIK IRPYFNEFQG LDSRSQTLRT PEEVPSAPPR AVNVATVKLS 780
  781 NSSSISVSWQ PPPTDMQNGV IQEYKVWCLG NDSQTRYNIN QTVDGSVLST VLKGLLPGVL 840
  841 YQVEVAAVTS AGVGKHSQPV SVLIKLPAEQ PTVTGGGSES EENVSLAEQI TDVVKQPAFI 900
  901 AGIGGACWVI LMGFSVWIYC RRKKRKELSH YTASFAYTPA VGFPHGESSG LNGRPGMLGA 960
  961 NMGNYPWLAD SWPTTNLVHN GKDSVNCCTS KHETPERYYN EAGISNYLNQ NEKYSADSNE1020
 1021 GPIYSTIDPT SEDLRSFTAQ YSQHTTPYAS TPIMPFTNQA PCSPEQDGSH WMTQPGTSNA1080
 1081 QYAQPDRSKT ENVKQPKQKL MGKPVKTPSL NWMDALPPPP ISGDLEQCDE EDDNELIQDM1140
 1141 GSDEEEWCPP LPERSYLMDG MVEDGPVPPP RGEASSPTTS YSHQSTATLT PSPRDDGHFH1200
 1201 DIPRLHQLEQ PHMTRRLPCG PVHVPRAPSP PLTQSNPNLS ANQECPDNTV PHRSAHKRDL1260
 1261 SQGAAQSVEN ISNTTPGRAR PSADHTPSGQ KSKVKKKASK SAQYRRDILQ GDLPPPPEPP1320
 1321 PEDQDNCAHV GGFECGQTSL ERAGSSNSSM ERREQSTPNR KNSAHRRIDD DDLIPYNKPN1380
 1381 FLSRGQMSSN CSTTGSSSSR GSTGSRGQGT GRKRNDEMR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle