YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23124399, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNPNLDEIQ LTKDDYERYS RHLILPEVGL EGQKRLKAAN VLCIGTGGLG SPLLLYLAAA  60
   61 GIGRIGIVDF DIVDTSNLQR QVIHGTSWVG KPKIESAKNR IHEINPYCQV DLYETRLTSE 120
  121 NALEILQPYD IVVDGTDNFP TRYLVNDACV LLNKPNVYGS ILRFEGQATV FNYQGGPNYR 180
  181 DLFPEPPPPG MVPSCAEGGV LGILPGIIGL IQATETVKII LGQGNTLSGR LLLYNALDMK 240
  241 FRELKLRPNP IRPVIEKLVD YEEFCGIPQA KAEEAKQQLE SQEMTVKDLK ELLDSGAKDF 300
  301 VLLDVRNPNE YEIAKIPGSV LVPLPDIENG NGVAKVKEIL NGHRLIAHCK MGGRSAKALA 360
  361 ILKEAGIVGT NVKGGITAWS REVDPSVPEY

Type	Start	End	Confidence
Cytoplasmic	1	40	0.64
Transmembrane Helix	41	60	0.62
Non-Cytoplasmic	61	390	0.94