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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|23128642, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADCCSQISS QLSALQAAVA NIKGVNEDAI VQRVLGIVQP QINSLKSQVA DVYRQIAQDA  60
   61 IQIGNLESEL HDLEAKLIAF GAAIAGLVAI AAAPLIAAAL EGVFAAIAAL GAEVAAAVAS 120
  121 AAGLQAEIVV LEAEIVGIGA TAGSALALAT AAQGEIVVLE AEIVGIGATA GSALALAGAA 180
  181 EGTAGTALAL AGTAEGTAGT ALALAGTAEA TANSALGAAL PALTLAQKAD LTADSALGLA 240
  241 VAAEGTAGSA LSIAEIAQIL AGTAEETAIA AGSTASTALF TAETAMAELQ PIAAQVEAQQ 300
  301 VELAFLEPQV KVALNLGTVA EGEAAAALAA AELAEGTAAT ALQLGTVAEG EAAAALATAE 360
  361 LALATAETSL AKPIIPGPPG LPGEPGAQGE PGAQGEPGPQ GEPGIPLPPL QGLPGEPGPQ 420
  421 GEPGPQGEPG PQGEPGIPLP PLQGLPGEPG PQGEPGPQGE PGPQGEPGPQ GEPGIPLPPL 480
  481 QGLPGEPGPQ GEPGPQGEPG PQGEPGIPLP PLQGLPGEPG PQGEPGPQGE PGPQGEPGIP 540
  541 LPPLQGLPGE PGPQGEPGPQ GEPGTPGEVN VTPEEITTAI TAGIAANFPP IAGEIFSHNC 600
  601 VTNQTETYPY GGLGLYGLQA QIQQVSNQLE SVSKTICRTY RIMGGNDWFE GENLNLRFNP 660
  661 EQTIKSQIKS CYQESATPQA DITPQTVQVQ NLPQMLYSLQ AVTWRREGLH KLPINAAPSL 720
  721 MPNITRNPAT GDILNIRDWQ PQEYQKISDS VSFNAYQLGQ FKAFMGEFPL TITINTEEGE 780
  781 KQIYMDNVSD ALAELAGISL LTHNDLEINT QLGVKTLIEV GATKNSSLIT QDIAFANAKY 840
  841 LGYQLNKVPK SVKTLFTPGE QDIKAFLKES DQQIITYTHR NGHLEHKLNT LLISAGITKA 900
  901 ALTGFAAPGD DVMGSIIAKS ALGQFTENAD DWRKFLELLN SPPGDMKIDG IPQLVIEDIT 960
  961 ARVQEHLSKL T

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle