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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|186686617, gi...
Protein type: Transmembrane
Type Confidence: 0.64
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNPSIYTVG GTVQAGSGIY IPRQADEELL GLCRSAIFAY VLTPRQMGKS SLMVRTADTL  60
   61 REEGISSVIV DLQELGASVT AEQWYFGFLV KLDDQLMFDT DVVSWWQEHE HLGVSQRLTQ 120
  121 FFEKVLLAEV EGQVVIFVDE IDSTLSLDFT DDFFIAIRYL YVARATNPEF GRLSFVLMGV 180
  181 ATPGDLISDA KRTPFNIGQR VDLTDFTFEE ALPFAEGLGL PSDESKQVLR QVLKWTGGHP 240
  241 YLTQRLCDAL VLIPPTPLKK GGNELPDLEI PTAPVSNSSI VPPFLRGVRG DRVLSSADID 300
  301 SIVSSTFFGA MSEQDNNLQF VRDMLTKRSP DPEVLTIYRE IRWGKRAVVD EEQSLAKSHL 360
  361 KLSGVVRREN NVLRVRNEVY RQVFDYKWIN KHLPFNLRDR WEQLKPALPY VIVMIVFSTL 420
  421 STGVAWYIYK QNLIAQKARD SEKEQRLIAQ DALKREQTQR QEADRQTKNA QNQQQKAEEQ 480
  481 HREADKQRQR AETGEAQAKS AQELAEKRGI DLEKALKQTK AAEQLAKDRQ ADAEKQRNIA 540
  541 QKQEQQAIAA KADADKRRIN AEILANSLKS QNLMASNFEL DALIEGLKVG KRLKTPNKKV 600
  601 EPNTRVLAVA TLQQVIYGVK ERNRLEAHSS SVRGVAFSPD GQTIASASDD KTVKLWNRNG 660
  661 QLLQTLTGHS SSVWGVAFSP DGQTIASASD DKTVKLWNRN GQLLQTLTGH SSSVRGVAFS 720
  721 PDGQTIASAS DDKTVKLWNR NGQLLQTLTG HSSSVWGVAF SPDGQTIASA SDDKTVKLWN 780
  781 RNGQLLQTLT GHSSSVWGVA FSPDGQTIAS ASDDKTVKLW NRNGQLLQTL TGHSSSVRGV 840
  841 AFSPDGQTIA SASDDKTVKL WNRNGQLLQT LTGHSSSVNG VAFRPDGQTI ASASDDKTVK 900
  901 LWNRNGQLLQ TLTGHSSSVW GVAFSPDGQT IASASDDKTV KLWNRNGQLL QTLTGHSSSV 960
  961 WGVAFSPDGQ TIASASDDKT VKLWNRNGQL LQTLTGHSSS VRGVAFSPDG QTIASASDDK1020
 1021 TVKLWNRNGQ LLQTLTGHSS SVWGVAFSPD DQTIASASDD KTVKLWNRNG QLLQTLTGHS1080
 1081 SSVRGVAFSP DGQTIASASD DKTVKLWNRN GQLLQTLTGH SSSVRGVAFS PDGQTIASAS1140
 1141 DDKTVKLWNR NGQLLQTLTG HSSSVWGVAF SPDGQTIASA SSDKTVKLWN LNLDDLMVKG1200
 1201 CTWVRDYLQN NPNVSKDDKH LCDDIGTRR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle