YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186685339, gi...
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPLVGIIMG SDSDLPTMKD AIAVCDEFGV ESEVAIVSAH RTPERMVQYA QLAHQRGIKV  60
   61 IIAGAGGAAH LPGMVASLTP LPVIGVPVVT RNLQGVDSLY SILQMPAGIP VATVAIGNAK 120
  121 NAGLLAVQIL ATQQPELLEK VQQYRQTLCE SVIAKQEKLE QLGYEQYLKQ MF

Type	Start	End	Confidence
Cytoplasmic	1	59	0.73
Transmembrane Helix	60	79	0.67
Non-Cytoplasmic	80	101	0.81
Transmembrane Helix	102	119	0.51
Cytoplasmic	120	172	0.54