YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186682968, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.67
Transmembrane Helix	7	27	0.91
Cytoplasmic	28	31	0.66
Transmembrane Helix	32	51	0.75
Non-Cytoplasmic	52	58	0.75
Transmembrane Helix	59	79	0.89
Cytoplasmic	80	86	0.88
Transmembrane Helix	87	110	0.87
Non-Cytoplasmic	111	119	0.67
Transmembrane Helix	120	140	0.92
Cytoplasmic	141	151	0.89
Transmembrane Helix	152	174	0.90
Non-Cytoplasmic	175	182	0.85
Transmembrane Helix	183	207	0.87
Cytoplasmic	208	221	0.87
Transmembrane Helix	222	243	0.93
Non-Cytoplasmic	244	274	0.85
Transmembrane Helix	275	293	0.81
Cytoplasmic	294	298	0.62
Transmembrane Helix	299	319	0.90
Non-Cytoplasmic	320	327	0.55
Transmembrane Helix	328	348	0.87
Cytoplasmic	349	359	0.69
Transmembrane Helix	360	379	0.94
Non-Cytoplasmic	380	778	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEDFRLIVD LVLVLGVAAC GGLLAALLRQ PVLLGYLIGG MIVGPAGLGL IKEVIQVETL  60
   61 AQFGVAFLLF ALGVEFSFAE LKKVKAIALG GGGLQIALTI LVTVVVSGLS GAWGTLPAKG 120
  121 MFLGCILSLS STAVVLKCLM ERNETETPHG QVMLGILVVQ DLALGLMLAV LPALNQPAET 180
  181 IGIAVLTALL WIALFAAGAV AAGMWLIPPL LRLLARTESR ELFLLGVVAL CLGIALLTEH 240
  241 LGLSIEMGAF VAGLMISEVE YADQTLTYVE PLRDIFASLF FAAIGMLIDP VFLWNNLELI 300
  301 LGLVALVFIG KFLIITPLVK LFRYPLKTAI IAGLGLAQIG EFSFVLASEG QSLGLVSRQI 360
  361 YLLILGTTAV TLMLTPFVLR LVPFLFNFAE SMPWLKPYLE EQEALDVSED LPFKDHVVVC 420
  421 GYGRVGKNLV KLLLQHNLPV VVIDQSESRI QQLREAGVSY VYGNCVSLHV LETAGVNHAK 480
  481 GMAIALPDPM STRLCLKRAL ELRPELDLVV RATQDKNIEV LYQLGAREVV QPEFEASLEM 540
  541 ATYLLTGLGL LSSAVVQREM QQIRNDHYLD LRPERSATEV ARDLRQATRD LNQRWYPLPA 600
  601 DSPLIGMSIE EADMRYLTGA SLMAIRRANG DEIDYPNNQT KLEDGDRLLV VGADEELAAL 660
  661 AEFAKGQAAV PGENSACQWV TVNADTPTLG KTLADLDINK QFGVQVQAIR RDGKFIRYPD 720
  721 GGMDLRVGDQ VLLCGSLTGL SQIEQLFAIA SSLPLSLPVL KAVQAEALKE FLPADSVD