YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23114179, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILAEKILSL RKSNGWSQEE LAEKMNVSRQ SISKWESAAA IPDINRILEL ARLFGVTTDY  60
   61 LLKDDFETAV YSGADETENY IRVSLQEMND FLKNNANYGS RIALGAILCI LSPVLLIVLS 120
  121 AVSRAGIAIT ERAASGIGIM TVFLMVAGAV AIFIISSAKM ERFEYLENGN FELEYGLSGI 180
  181 IKEKRAAFEK THVQRTALGV VLCILCPIPL IVAGIFRASN MTLSCFTALL LAVVSVAVYL 240
  241 FITVGTIKGG YDQLLREGEF EPKEQVRAKR VSKFAGVYWP IVVAFYLGWS FLTNNWGITW 300
  301 VVLPIAALIF AGVSSILHSL ER

Type	Start	End	Confidence
Cytoplasmic	1	101	0.99
Transmembrane Helix	102	123	0.91
Non-Cytoplasmic	124	133	0.74
Transmembrane Helix	134	155	0.94
Cytoplasmic	156	194	0.95
Transmembrane Helix	195	216	0.92
Non-Cytoplasmic	217	224	0.77
Transmembrane Helix	225	247	0.90
Cytoplasmic	248	270	0.92
Transmembrane Helix	271	292	0.86
Non-Cytoplasmic	293	297	0.80
Transmembrane Helix	298	320	0.90
Cytoplasmic	321	322	0.96