YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45479863
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.73
Transmembrane Helix	13	33	0.94
Cytoplasmic	34	95	0.79
Transmembrane Helix	96	116	0.90
Non-Cytoplasmic	117	146	0.73
Transmembrane Helix	147	169	0.82
Cytoplasmic	170	188	0.75
Transmembrane Helix	189	212	0.88
Non-Cytoplasmic	213	228	0.71
Transmembrane Helix	229	249	0.73
Cytoplasmic	250	297	0.71
Transmembrane Helix	298	320	0.67
Non-Cytoplasmic	321	326	0.53
Transmembrane Helix	327	349	0.91
Cytoplasmic	350	367	0.58
Transmembrane Helix	368	388	0.90
Non-Cytoplasmic	389	404	0.56
Transmembrane Helix	405	425	0.92
Cytoplasmic	426	449	0.54
Transmembrane Helix	450	464	0.55
Non-Cytoplasmic	465	465	0.05
Transmembrane Helix	466	480	0.78
Cytoplasmic	481	481	0.22
Transmembrane Helix	482	505	0.69
Non-Cytoplasmic	506	540	0.49
Transmembrane Helix	541	564	0.85
Cytoplasmic	565	572	0.45
Transmembrane Helix	573	594	0.87
Non-Cytoplasmic	595	650	0.49
Transmembrane Helix	651	684	0.69
Cytoplasmic	685	741	0.64
Transmembrane Helix	742	765	0.79
Non-Cytoplasmic	766	769	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTAVLSELG TEILVPVCAV VGIVFSLIQW YLVSRVKLTP ERQAPGSSPA GANKNGYNDC  60
   61 LIEEEEGLND HSVVAKCAEI RTAISEGATS FLFTEYQYVG VFMVAFAILI FLFLGSVEGF 120
  121 STKSQPCTYD KQKTCKPALA TAIFSTVSFL LGAFTSVVSG FLGMKIATYA NARTTLEARK 180
  181 GVGKAFITAF RSGAVMGFLL AANGLLVLYI AINLFKLYYG EDWEGLFESI TGYGLGGSSM 240
  241 ALFGRVGGGI YTKAADVGAD LVGKVERNIP EDDPRNPAVI ADNVGDNVGD IAGMGSDLFG 300
  301 SYAESSCAAL VVVPISSFGI NHDFTAMLYP LLISSVGILV CLITTLFATD FFEIKAVKEI 360
  361 EPALKKQLII STVLMTVGIA IVTWIGLPSS FTIFNFGTQK VVKNWQLFLC VAVGLWAGLI 420
  421 IGFVTEYYTS NAYSPVQDVA DSCRTGAATN VIFGLALGYK SVIIPIFAIA IGIFVSFSFA 480
  481 AMYGIAVAAL GMLSTIATGL AIDAYGPISD NAGGIAEMAG MSHRIRERTD ALDAAGNTTA 540
  541 AIGKGFAIGS AALVSLALFG AFVSRASIST VDVLTPKVFI GLIVGAMLPY WFSAMTMKSV 600
  601 GSAALKMVEE VRRQFNTIPG LMEGHAKPDY ATCVKISTDA SIKEMIPPGA LVMLTPLIVG 660
  661 TFFGVETLSG VLAGALVSGV QIAISASNTG GAWDNAKKYI EAGASEHART LGPKGSDPHK 720
  721 AAVIGDTIGD PLKDTSGPSL NILIKLMAVE SLVFAPFFAT HGGLLFKMF