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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|45478222
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQMDLTDIY RTFYPKAKGY TFFSAPHGTF SKIDHIIGQK TGLNRYRKIE IIPCVLSDHH  60
   61 GLKLVFNNNQ GRMPTYTWKL NNALLNDNLV KEEIKKEIKN FLEFDENEDT THPNLWDTMK 120
  121 AVLRGKLIAL SACRKKQERA YVSSLTAHLK ALEQKEANTP RRSRRQEIIK LRAEINQVET 180
  181 KRTIERINRT KSWFFEKINK IDKPLARLTR GHRGCVQINK IRNEKGDITT DSEEIQKIIR 240
  241 SYYKNLYSTK LENLQEMDNF LDRYQVPKLN QEQINQLNNP ITPKEIEAVI KDLPTKKSPG 300
  301 PDGFRAEFYQ TFIEDLIPIL SKLFHKIETD GALPNSFYEA TITLIPKPHK DTTKKENFRP 360
  361 ISLMNIDAKI LNKILANRIQ EHIKTIIHHD QVGFIPGMQG WFNIRKTINV IHYINKLKEQ 420
  421 NHMIISLDAE KAFDKIQHPF MIKVLERIGI QGPYLNIVKA IYSKPVANIK LNGEKLEAIP 480
  481 LKSGTRQGCP LSPYLFNIVL EVLARAIRQQ KEIKGIQIGK EEVKISLFAD DMIVYLKKQA 540
  541 EKEIRETTPF IIDPNNIKYL GVTLTKQVKD LYNKNFKTLR KEIEEDLRRW KDLPCSWIGR 600
  601 INLVKMAILP KAIYRFNAIP IKIPIQFFKE LDRTICKFIW NNKKPRIAKA ILNNKRTSGG 660
  661 ITIPELKQYY RAIVIKTAWY WYRDRQIDQW NRIEDPEMNP HTYGHLIFDK GAKTIQWKKD 720
  721 SIFSKWCWFN WRATCRRMQI DPCLSPCTKL KSKWIKDLHI KPDTLKLIEE KLGKHLEHMG 780
  781 TGKNFLNKTP MAYALRSRID KWDLIKLQSF CKAKDTVVRT KRQPTDWEKI FTNPTTDRGL 840
  841 ISKIYKELKK LERRETNNPI KKWGSELNKE FTAEECRMAE KHLKKCSTSL VIREMQIKTT 900
  901 LRFHLTPVRM AKIKNSGDSR CWRGCGERGT LLHCWWDCRL VKPFSKSVWR FLRKLDIELP 960
  961 EDPAIPLLGI YPKDASTYKR DTCSTMFIAV LFIIARSWKE PRCPSTEEWI QKMWYIYTME1020
 1021 YYSAIKNNEF MKFVGKWLEL ENIILSELTQ SQKDIHGTAP IGIGTGSGTI RMCVLVETGV1080
 1081 KEVCDWGWAL RFQMFKPGPV SLSGNELTSE LFLYLAKKGQ STKPQIYFLT VVLRGRNAED1140
 1141 HALPPGKCTA HARQQPPDPG LSGSDALKAE GRIPCLCGSA PCLLCRCCPS GNNSTVTRLI1200
 1201 YALFLLVGVC VACVMLIPGM EEQLNKAIRN QAGSGLDVSF LQLALIISVA AMQAVGEDCH1260
 1261 RQSYSVVDSA IIPRQDVANG TVVTSQLERP QHWKEFTSVI NIPGFCENEK GVVPCNILVG1320
 1321 YKAVYRLCFG LAMFYLLLSL LMIKVKSSSD PRAAVHNGFW FFKFATAVAI IIGAFFIPEG1380
 1381 TFTTVWFYVG MAGAFCFILI QLVLLIDFAH SWNESWVEKM EEGNSRCWYA ALLSATALNY1440
 1441 LLSLVAIILF FVYYTHPASC SENKAFISVN MLLCIGASVM SILPKIQESQ PRSGLLQSSV1500
 1501 ITIYTMYLTW SAMTNEPETN CNPSLLSIIG FNTTRPVPKD GQSVQWWHPQ GIIGLVLFLL1560
 1561 CVFYSSIRTS NNSQVNKLTL TSDESTLIED GNGRSDGSLD DGEGVHRAVD NERDGVTYSY1620
 1621 SFFHFMLFLA SLYIMMTLTN WYRYEPSREM KSQWTAVWVK ISSSWIGIVL YVWTLVAPLV1680
 1681 LTNRDFD

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