YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114145616, gi...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPYNSVVVV VVVVVVVVVV VVVVWVNNPT LGEFCFTMIG RADIEGSKSD VAMNAWPPQA  60
   61 SYPCGNFSDT SCLKPKSYGS GLPTSLTYIV PTCQRLFTLE TCCGYGYGPA RDLHPLPRIF 120
  121 KGQRELTGRR RNRDAFQGTG PSLGANPFQG ALPFTKKREL SPGLPPASPG SVALPHWTPR 180
  181 GAHLRHSGFG DLNPTPFRSA EGNGGHRPSL RNGTRPSLRT D

Type	Start	End	Confidence
Cytoplasmic	1	6	0.56
Transmembrane Helix	7	26	0.93
Non-Cytoplasmic	27	221	0.64