YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIP27_MAIZE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDVEQVTE QGEYSAKDYH DPPPAPLIDP DELTKWSLYR AAIAEFIATL LFLYITVLTI  60
   61 IGYKRQSDTK IPGNTECDGV GILGIAWAFG GMIFILVYCT AGISGGHINP AVTFGLFLGR 120
  121 KVSLVRALLY MIAQCAGAIC GAGLAKGFQK SFYNRYGGGV NTVSDGYNKG TALGAEIIGT 180
  181 FVLVYTVFSA TDPKRNARDS HVPVLAPLPI GFAVFMVHLA TIPVTGTGIN PARSFGPAVI 240
  241 FNNDKAWDDQ WIYWVGPFVG AAVAAIYHQY ILRGSAIKAL GSFRSNA

Type	Start	End	Confidence
Cytoplasmic	1	41	0.88
Transmembrane Helix	42	63	0.90
Non-Cytoplasmic	64	82	0.86
Transmembrane Helix	83	108	0.81
Cytoplasmic	109	126	0.74
Transmembrane Helix	127	148	0.91
Non-Cytoplasmic	149	169	0.91
Transmembrane Helix	170	189	0.91
Cytoplasmic	190	201	0.86
Transmembrane Helix	202	222	0.89
Non-Cytoplasmic	223	250	0.88
Transmembrane Helix	251	271	0.95
Cytoplasmic	272	287	0.95