YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9858875
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVDQFEEVL MKTSQLFPLP TATQSAQPTH VAPVPTVLPD TPIYETVGDS GSKTLWVVFV  60
   61 LMLIASAAFT ALSWKIPVNR RLYHVITTII TLTAALSYFA MATGHGVALN KIVIRTQHDH 120
  121 VPDTYETVYR QVYYARYIDW AITTPLLLLD LGLLAGMSGA HIFMAIVADL IMVLTGLFAA 180
  181 FGSEGTPQKW GWYTIACIAY IFVVWHLVLN GGANARVKGE KLRSFFVAIG AYTLILWTAY 240
  241 PIVWGLADGA RKIGVDGEII AYAVLDVLAK GVFGAWLLVT HANLRESDVE LNGFWANGLN 300
  301 REGAIRIGED DGA

Type	Start	End	Confidence
Non-Cytoplasmic	1	53	0.59
Transmembrane Helix	54	74	0.93
Cytoplasmic	75	81	0.55
Transmembrane Helix	82	104	0.87
Non-Cytoplasmic	105	136	0.58
Transmembrane Helix	137	154	0.60
Cytoplasmic	155	160	0.56
Transmembrane Helix	161	182	0.86
Non-Cytoplasmic	183	189	0.80
Transmembrane Helix	190	209	0.95
Cytoplasmic	210	223	0.73
Transmembrane Helix	224	244	0.92
Non-Cytoplasmic	245	258	0.80
Transmembrane Helix	259	280	0.81
Cytoplasmic	281	313	0.85