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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|156953, gi|85107
Protein type: Transmembrane
Type Confidence: 0.64
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDSIHRRR MALHCPITSL ILLLIAMSGH GYNIDLPSYV RFRQSSNSMF GFSIAMHKGR  60
   61 SGFYGNQNNV SLIVGAPKFD TSRYQQGVTE AGGVFKCSLN DDDCKLVPFD SKGNNRNVDK 120
  121 EVVDRKSYQW LGATVATGRD SDLVVACAPR YVFHTMTPSR AFRIDPVGTC FTSHNFEEFY 180
  181 EVSPCRTNNW GYHRQGSCQA GFSAAINGNG SRLFIGAPGS WYWQGQTYSI PPDAKFPFKP 240
  241 PLYQPFGTGG MASSHDVTRP ENQVFSTSES ASVNDDSYLG YSMVTGDFDG DRSEDVAIGM 300
  301 PRGGNLVGRI VVNRWNMANI FNITGRQIGE YFGYSLATSD VDGDGLDDLL IGAPMYTDPD 360
  361 NVEGKYDVGR VYILLQGGPT EEKRWTTEHI RDGYHSKGRF GLALTTLGDV NGDGYGDFAV 420
  421 GAPYDGPEGR GVVYIFHGSP MGPLAKPSQI IKSEQLVEGA PYPRTFGFAL SGGLDMDGNT 480
  481 YPDLAVGAYS SDQVFIFKSR PVAAVNAETS FASNSKLISL DDRSCQLVRD HKKVPCMLLT 540
  541 TCWSYTGRYL PEQLDFDVSW LLDAKKLLNP RMFFLRDEGK NIRNQTIRLN YGQKYCLNET 600
  601 VYLLDKVQDK LTPLEVEARY NLRSSRPLDP MVRHRRSILE PVIDQNREIV LRDAINIQKN 660
  661 CGPDNICEPD LKLKVSTVDK YLFGSPEPLV IEVFISNTNE DAFEAAFYMV TPPDLQFRKL 720
  721 QQLGEKKDTP ITCSPPTPEN NHTLKCDIGN PLESGKIAHF KISLVPEEKY GSSSSYDFYW 780
  781 EANSTNLEKP GSEYDNKIRQ SVGIWVDTDL DIKGTSLPDY QLYKADDYKE LENATKEDDI 840
  841 GPQVVHIYEI RNNRPSIIEE AEVFIHLPYE TIVGDPLMYL LNQPETGGKI QCDDVAFNEY 900
  901 NLLLDEKLVK KSYLQAQGAI WNSAQVSGQS SSSSSSGGAS VHIEKARGEG FVRGVLVSNS 960
  961 TDAGDKLRSQ ASGATAQEDT LEALGDASFV HRDRASQAVQ EPQVNQTSFT TYSTSSSSSG1020
 1021 SGAPSAQLRG HSTQGHIQMA GPVQHTSSSS SSNYRSWPAQ QQHQQLLLAG SGGSGLGSPV1080
 1081 TFNDKSQFGG RNNNFHTGTL DLGTLNRGNV DNELYRSQGQ YQNPSQSLGQ SQGQFQANAN1140
 1141 QGHYQGQNQA QFQARNPGFQ GQTSYQGQTQ YSGQPGGYQT HHVTYSSGSK PYYGRENEDF1200
 1201 YDEDNLQQAT PGHWSSSSSS SSSSGTRRLR RSDDKDGATK KPQQIDLNSP CQSARCKSIR1260
 1261 CVVTNLGTED GDAAFVAIRA RMVAKTMEKL ASNVPLNVST LAVANVTLLP FIGAPKDAIV1320
 1321 KTHEIFYKAE PEPLQVPDVV PLWVVVLAAC AGALIFLLLV WLLYKCGFFN RNRPTDHSQE1380
 1381 RQPLRNGYHG DEHL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle