YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IOD2_RAT
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLSVDLLI TLQILPVFFS NCLFLALYDS VILLKHVALL LSRSKSTRGE WRRMLTSEGL  60
   61 RCVWNSFLLD AYKQVKLGED APNSSVVHVS NPEAGNNCAS EKTADGAECH LLDFASAERP 120
  121 LVVNFGSATU PPFTRQLPAF RQLVEEFSSV ADFLLVYIDE AHPSDGWAVP GDSSMSFEVK 180
  181 KHRNQEDRCA AAHQLLERFS LPPQCQVVAD RMDNNANVAY GVAFERVCIV QRRKIAYLGG 240
  241 KGPFSYNLQE VRSWLEKNFS KRUILD

Type	Start	End	Confidence
Cytoplasmic	1	8	0.33
Transmembrane Helix	9	32	0.61
Non-Cytoplasmic	33	266	0.59