YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11596247
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEAFYIFFC LIGFLCSIIP SIWHWKYRNV APLCLIFWVS STNLVYFINS IIWYNGSETS  60
   61 YRGDLYCDIV TKLILGSVTG ELGATAAITH YLSKIMKPSY SFLQSKITRR NQAIEDLLFS 120
  121 FGPPIMIMSL HYIVQPARYV IDGTSGCMPW TDRSWLAVAI VLLWPPVFGS ISAYYSVKVI 180
  181 ISYIKKRNEF QTVLKDSKTS MTLSRFIRLI GLSSLIITIY LPLNIYLLIA NIAEIIRSNI 240
  241 KYSWSHVHNW SSIIFYVSKS NMPFNRWLSP SSGIIIFIFF GMGSDAIVMY KEIAKKLYIT 300
  301 HFFHFIQRKI FRKKTQDIKD AENYYNSYSF EKSLGSCPPL FYNQTRDIRI VENGSLNECP 360
  361 SYPPIYTDHN NHNNNHNNHN HNNNHNHNHN HNHNHNHNHN HHNNHHNNHH NNHNITPSTY 420
  421 NQSHEHIFNT EYNKYRSHK

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.85
Transmembrane Helix	5	25	0.94
Cytoplasmic	26	33	0.76
Transmembrane Helix	34	54	0.93
Non-Cytoplasmic	55	72	0.81
Transmembrane Helix	73	92	0.90
Cytoplasmic	93	112	0.94
Transmembrane Helix	113	134	0.91
Non-Cytoplasmic	135	154	0.95
Transmembrane Helix	155	177	0.94
Cytoplasmic	178	205	0.95
Transmembrane Helix	206	230	0.83
Non-Cytoplasmic	231	267	0.94
Transmembrane Helix	268	289	0.87
Cytoplasmic	290	439	0.96