YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2135623, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKNHACFVE TPNLAGEGMS DRPTARRWGK CGPLCTRENI MVAFKGVWTQ AFWKAVTAEF  60
   61 LAMLIFVLLS LGSTINWGGT EKPLPVDMVL ISLCFGLSIA TMVQCFGHIS GGHINPAVTV 120
  121 AMVCTRKISI AKSVFYIAAQ CLGAIIGAGI LYLVTPPSVV GGLGVTMVHG NLTAGHGLLV 180
  181 ELIITFQLVF TIFASCDSKR TDVTGSIALA IGFSVAIGHL FAINYTGASM NPARSFGPAV 240
  241 IMGNWENHWI YWVGPIIGAV LAGALYEYVF CPDVEFKRRF KEAFSKAAQQ TKGSYMEVED 300
  301 NRSQAKTDDL ILKLGVVHVI DVDRGEEKKG KDQSGEVLSS V

Type	Start	End	Confidence
Cytoplasmic	1	54	0.93
Transmembrane Helix	55	75	0.87
Non-Cytoplasmic	76	87	0.78
Transmembrane Helix	88	112	0.84
Cytoplasmic	113	132	0.87
Transmembrane Helix	133	154	0.93
Non-Cytoplasmic	155	171	0.91
Transmembrane Helix	172	194	0.90
Cytoplasmic	195	202	0.87
Transmembrane Helix	203	223	0.92
Non-Cytoplasmic	224	248	0.90
Transmembrane Helix	249	270	0.96
Cytoplasmic	271	341	0.99