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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2662438
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.96
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPALTALLC LGLSLGPRTR MQAGPFPKPT LWAEPGSVIS WGSPVTIWCQ GSLEAQEYQL  60
   61 DKEGSPEPWD RNNPLEPKNK ARFSIPSMTQ HHAGRYRCHY YSSAGWSEPS DPLELVMTGF 120
  121 YNKPTLSALP SPVVASGGNM TLRCGSQKGY HHFVLMKEGE HQLPRTLDSQ QLHSGGFQAL 180
  181 FPVGPVTPSH RWRFTCYYYY TNTPWVWSHP SDPLEILPSG VSRKPSLLTL QGPVLAPGQS 240
  241 LTLQCGSDVG YDRFVLYKEG ERDFLQRPGQ QPQAGLSQAN FTLGPVSRSY GGQYRCYGAH 300
  301 NLSSEWSAPS DPLDILITGQ IYDTVSLSAQ PGPTVASGEN MTLLCQSRGY FDTFLLTKEG 360
  361 AAHPPLRLRS MYGAHKYQAE FPMSPVTSAH AGTYRCYGSR SSNPHLLSFP SEPLELMVSG 420
  421 HSGGSSLPPT GPPSTPGLGR YLEVLIGVSV AFVLLLFLLL FLLLRRQRHS KHRTSDQRKT 480
  481 DFQRPAGAAE TEPKDRGLLR RSSPAADVQE ENLYAAVKDT QSEDRVELDS QSPHDEDPQA 540
  541 VTYAPVKHSS PRREMASPPS SLSGEFLDTK DRQVEEDRQM DTEAAASEAS QDVTYAQLHS 600
  601 LTLRRKATEP PPSQEGEPPA EPSIYATLAI H

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle