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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|13272276
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKFNYKLP SMVALTLFGT AFTAHHAHAA EETQDQTKNS NVLDDQATLK QAEQAKNEVT  60
   61 QSAQNVSGTQ TYQDPTKVQS KQDTTSNNYD ASLDELNDSS SKASQQEQSN NSNQPTDSKE 120
  121 TNTSSVNTYQ DSTKDIKNNE ISKDAVTSED NETSKVDNTN KEVSETEQQE STVENVNKDE 180
  181 NSNNNIQASS NQTNNLNDQE KQEATSNQAS NNKTSQQATT DSTEKSNNKV SQTNSSGYNF 240
  241 DDDEDDVDTT NAQSKNTKAD QPQVASLSAQ NNVNTKSESN PTIKNSTNST NTSKSATQNT 300
  301 KVSNTQANNT TTESNNKVST FSSVAKPRMM YAVNKKTTSS LPKYTPQVKS SINDYIRKKN 360
  361 YKAPQIEENY TSYFPKYGYR NGVGRPEGIV VHDTANDNST IDGEINYMKN NYQSAFVHAF 420
  421 VDGNRIVETA PTDYLSWGAG PQGNERFINV EIVHTHDYDS FARSMNNYAD YAATQLQYYG 480
  481 LKPDSAENDG QGTVWTHYAI SRYLGGTDHT DPHQYFRSHN YSYAELYDLI YEKYLIKTGQ 540
  541 VAPWGTSSTS PSKPSKPSDS SNNNKLTVSA NSGVAQIKPS NSGLYTTVYD EKGHSTDQAQ 600
  601 KTLSVTKSAT LGNNKFYLVE DYNTGKKYGW VKQGDVVYNT AKSPVKVNQT YNVKAGSTLY 660
  661 TVPWGTPSQV ASKVSGSGNQ TFKATKQQQI DKAIYLYGTV NGKSGWISKY YLTTPSSSNT 720
  721 KPSKPSTDNS SSNNKLTVSA NSGVAQIKAK NNGVYTTVYD KKGKTTDQVQ RTLSVTKSAT 780
  781 LGNDKFYLVE DYNTGKKYGW VKQDDVVYNT AKSPVKVNQN YSIKPGVKLY TVPWGTYNQV 840
  841 ASTVSGSGNQ TFKATKQQQI DKATYLYGTV NGKSGWVSKY YLTTPTQSKV AVSKPKTSTK 900
  901 AVSTNSKATT ADRAAITQTS AKASNTNSTQ TINKIAQVKA NNSGIRASVF DKKAKSGAKY 960
  961 GNRTYIITKQ RTEGNNTYVL LQDSTRNTPL GWVNVKDVTS QNIGNQTKAT GQYKVSQTNN1020
 1021 GLYSIAWGTK NQQLLPSNTI ASKTFNASKS LYVGKDLYLY GTVNNRTGWI AAKDLIQSNK1080
 1081 DVQARPYNYT FVISNSNSYY YEDLGKNARY SLKPYYDKTF VVSKQKNING VTWYYGKLTN1140
 1141 GKYVWIKSTD VAKESVKYVN TGYTLAHAAE IQNDLYDTPQ IQKVPGQWTN ANYNEIKDAM1200
 1201 DPNKLTKDSG ARYQFLRLDQ PQSLSVAALN ELLKGQGVLE GQGAAFSEAA KKYGINEIYL1260
 1261 VAHALVETGN GTSQLAKGGD IVNGKFSDKT KTKYHNVFGI GAYDSSPLIE GIKYAKNAGW1320
 1321 DSVSKAIIGG AKFIGQSYIK AGQNTLYKMR WNPSNPGTHQ YATDIHWATV NAQTIKGFYD1380
 1381 KIGEVGKYYE IPKYK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle