YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FUT2_RAT
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAQVPFSF PLAHFLIFVF VTSTITHLQQ RIVKLQPLSE KELPMTTQMS SGNTESPEMR  60
   61 RDSEQHGNGE LRGMFTINSI GRLGNQMGEY ATLFALARMN GRLAFIPASM HNALAPIFRI 120
  121 SLPVLHSDTA KKIPWQNYHL NDWMEERYRH IPGHFVRFTG YPCSWTFYHH LRPEILKEFT 180
  181 LHDHVREEAQ AFLRGLRVNG SQPSTFVGVH VRRGDYVHVM PNVWKGVVAD RGYLEKALDM 240
  241 FRARYSSPVF VVTSNGMAWC RENINASRGD VVFAGNGIEG SPAKDFALLT QCNHTIMTIG 300
  301 TFGIWAAYLA GGDTIYLANY TLPDSPFLKV FKPEAAFLPE WVGIPADLSP LLKH

Type	Start	End	Confidence
Cytoplasmic	1	7	0.44
Transmembrane Helix	8	28	0.60
Non-Cytoplasmic	29	354	0.81