YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|633129, gi\|10...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSNYQTMG KRMKLLNFIS IHMFSSTPTL LSLSQLFKVR WAESILLTTN IIMESIIDAH  60
   61 CHPTDAPQEL HLVANLSVGK LIVMGTRPTD QKYVEQLAKE YPGKVIPSFG IHPWFSYYLY 120
  121 DDLDKDLQSS ETRKKKHYEK ILTPIPDEDF INALPNPVPI SEFLEDARRH LKQYPNALIG 180
  181 EIGLDKPFRL PVGPYDARSS LPQGPLSPFY VKMEHQCKVF EAQVRLAAEF QRAVSVHCVQ 240
  241 TYALLYSSLA KFWDGRWIPS KTKIRKMKKE EYENSLAEER KHYPPKICLH SYSGSIEQIS 300
  301 QFSAHKVPTE FYYSFSIGIN SRYKNFIQTL KGVPDDKLLA ESDHHSASQI DELVRQSLNV 360
  361 MSEAKSWTFE DTITKISSNS KAFLKVT

Type	Start	End	Confidence
Cytoplasmic	1	14	0.65
Transmembrane Helix	15	35	0.61
Non-Cytoplasmic	36	387	0.98