YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39598363, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPTSSVEK GIRRRLPPPL NRMGLFEPYI KDGKKITEIV RLNPVEVFLA GFIPPMFGSV  60
   61 SAIAIALIFH NDEISNYNWQ CGRARLPSLS RIINLPVERT FWQLFLLFHV PIRVVELITG 120
  121 FSRYKRMRNV NYKRVWLYEL SRYLYFVVGL MELIFLSGLS IIGERENIQV HVIFFYVFGI 180
  181 CGIVHMISNI FCHAHSLYYL NPYGRLSYYL KIVFTSLYVL STPILVASFL LYWRKCITWA 240
  241 YDVFALCEYS GVFLNICFHG CAFFDIRYKV TFSVRKIEDV VQNEPTKQQI EAIPEKH

Type	Start	End	Confidence
Cytoplasmic	1	46	0.97
Transmembrane Helix	47	69	0.94
Non-Cytoplasmic	70	100	0.96
Transmembrane Helix	101	122	0.86
Cytoplasmic	123	142	0.88
Transmembrane Helix	143	163	0.95
Non-Cytoplasmic	164	171	0.81
Transmembrane Helix	172	192	0.94
Cytoplasmic	193	207	0.85
Transmembrane Helix	208	232	0.86
Non-Cytoplasmic	233	244	0.72
Transmembrane Helix	245	266	0.79
Cytoplasmic	267	297	0.91