YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187027547, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEFVLKLGL MLAMFVLTFI VGMSPLKVLH KLRHEAATAQ SSSKHKHVSL VLCLLTCFSG  60
   61 GVFLATCFLH LFPELQEKMR SLSHYGWDTT GYPYSELLSC LGFFLIFFLE EVVIMMIPSF 120
  121 AHGHGHGGHG HDHHHHEQTP PIEVGGGCCM VESAVEESKK ENQENIADET TALTATSTKR 180
  181 AISVDKEGEG HCQTHCPLTV HERKGSNECT ANATQGRHIL KNNRLGRRIT RNRNRYSSYG 240
  241 STFNGSEDQG SECTFAPVAF AEPERCETNC EAIDEDPPIL MKSRPHAHSH GVRSITFVLA 300
  301 LSIHSIIEGL AFGVGSGENA IIALFTSLMV HKLIVAFSVG LQLFRTHAHQ IKWVIISIVT 360
  361 LASMTPLGAL IGLVITSAGE DTLWKDATVV VLQGLAVGTF IYVTFFEVLL HERDNEHPNL 420
  421 LKLLVMFIGF ALIGGIRIFE SPHGHSH

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.90
Transmembrane Helix	8	29	0.94
Cytoplasmic	30	49	0.92
Transmembrane Helix	50	72	0.95
Non-Cytoplasmic	73	91	0.95
Transmembrane Helix	92	114	0.82
Cytoplasmic	115	290	0.98
Transmembrane Helix	291	312	0.91
Non-Cytoplasmic	313	319	0.82
Transmembrane Helix	320	344	0.87
Cytoplasmic	345	352	0.91
Transmembrane Helix	353	375	0.93
Non-Cytoplasmic	376	388	0.79
Transmembrane Helix	389	410	0.90
Cytoplasmic	411	419	0.90
Transmembrane Helix	420	439	0.96
Non-Cytoplasmic	440	447	0.91