YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39598050, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.97
Transmembrane Helix	94	117	0.90
Non-Cytoplasmic	118	313	0.99
Transmembrane Helix	314	334	0.94
Cytoplasmic	335	340	0.86
Transmembrane Helix	341	363	0.91
Non-Cytoplasmic	364	391	0.95
Transmembrane Helix	392	414	0.93
Cytoplasmic	415	434	0.89
Transmembrane Helix	435	457	0.88
Non-Cytoplasmic	458	517	0.93
Transmembrane Helix	518	543	0.91
Cytoplasmic	544	563	0.93
Transmembrane Helix	564	586	0.88
Non-Cytoplasmic	587	602	0.90
Transmembrane Helix	603	624	0.62
Cytoplasmic	625	662	0.68
Transmembrane Helix	663	687	0.83
Non-Cytoplasmic	688	700	0.78
Transmembrane Helix	701	723	0.87
Cytoplasmic	724	773	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKKRTMPA AEVYEKSDSF GQLPSAPPIS PHRMDHIYPD SYGSPPPLHQ AYHVQPARAN  60
   61 YVPDQIARFN VIKPDRLAKR HNPQLYTKRG CTDVFCCFLF FVFLCGWVVV ASLGIMWGDP 120
  121 QRLIYPTDSE FRRCGVDQGG YYNFSKRPYL FYFDLTKCIS YATALGGCQT TQICVEECPS 180
  181 QYFSYLQLRT ASAAEIQNKM KNVVYCTDDV DKSTVTTFVA LQSLVQRGKC VSYTVKSVPV 240
  241 LQRCFPEAIF NAVDNVNTVL NSSNSLDYLK RTFGDDALIP QDIQITGQSS EVMKSVVEDQ 300
  301 PVTHKVIHDL SQTWWQTLIL IFAAGMLSFI WTVIMRLLGS LLIWLSIFLV LGALGFGAGF 360
  361 SWIKWNNLKA TGAIDDYSFH PAFDAYFEMP TTWFVVAIAT SVLLVIFLLV ILFIRQRISI 420
  421 ACALISESSK AIGSMMSTLV FPLFPFLLHI GVFALWGSIA IWLASSGQEI CRMKETNGQV 480
  481 YNTSTKCDCN AKLAGCTYVG IEKESDTIFW LQVYNLFAFF WLSCFVTALG DIALAGAFAS 540
  541 YYWARDKRHD VPTFPVIRAL NRAMRYNLGS IAFGSLIIAI VKIIRVMLEY IDHKLGKSEN 600
  601 KAVKWFLMCL KCCFWCLEMF FKFLTKNAYI MIAIYGKNFF SSAKDSFLLI TRNIVRTVVV 660
  661 HKVAGILLFL GKAMITLGMG ILSFYYFSGR WVVEGVPKVD LYYYFVPIVI VVIGSYFMAD 720
  721 LFFDVYEMAV DTTFICFLED SEQNDGSLER PYFMSQKLLE ILGTKNEIPL HTK