YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157769411
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	16	0.97
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	217	0.99
Transmembrane Helix	218	237	0.94
Cytoplasmic	238	246	0.83
Transmembrane Helix	247	266	0.81
Non-Cytoplasmic	267	294	0.79
Transmembrane Helix	295	311	0.45
Cytoplasmic	312	318	0.44
Transmembrane Helix	319	339	0.58
Non-Cytoplasmic	340	354	0.81
Transmembrane Helix	355	378	0.80
Cytoplasmic	379	395	0.72
Transmembrane Helix	396	417	0.91
Non-Cytoplasmic	418	433	0.79
Transmembrane Helix	434	452	0.96
Cytoplasmic	453	557	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTVVILLAI IGHAAANLLM PGIYTEVVEI QQGKYQLIGV PQAALNGTIV QLEFTCDPDV  60
   61 DLEFDTEYVL RSSPCDKEFF NTKENERRQN LVFYFNETNQ NHIPDAFDYN EIVYYKSPIQ 120
  121 TISCKGSHGR FLFPIPTGPM AVKQVTPVHV DRVKRDTGLG SFHAAQTIPR DGIYYMIIKV 180
  181 VGKSFPSKLN ANTNVTISVQ WKAPYGFLSA IDWPLLRFYK IMCVFYSALA LLWVYYCIKY 240
  241 YRDILRIQYW IGAVIVLGMV EKAFFLSEYA TMNDTGSSID GILEIAEIVS CAKKTMSRVL 300
  301 VIIVCVGYGV VKPRLGQTLN QVAGVGLVYF IFCSIEGIAR VSKNTVEATR QKQFAALPLV 360
  361 LTEMIIFYWI FTSLAATIRM LRLKRNDVKL NVYRHFANTL VFSVIASVVF MLWSMIYHIF 420
  421 PTCRVDWKEL WVDTAFWHVL FCFILIVIMI LWRPSQNNQR YAFTPLLDDS EDENDQDEIF 480
  481 NAFAPGYDIL TARTSGSGAE TRKLREAEKE QERKDEAIKE DLRWIEENIP TTLADTIGGL 540
  541 DENDEIESKQ LEVSKML