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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39597788, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.51
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKKEPGVAK SVCIAAIIAG VFMLFVLVVI LAVSAGRGNG ESLYDKDDPI LELDVDTFNP  60
   61 AIYGVKKAHF VEFYSSWCGA CIGYAPTFKK FAKQLEKWAP LVQVTVVNCA DDKNMPLCRE 120
  121 HSVSSYPSLR YFKYNSASKD DGMKYSGDKY DINKLAHDIA GLAQADAQRQ NPENWPTFLP 180
  181 LSDSTTLEDV FKSIGSTPYL AIVVQDSPSV IAWSNLINYH GNNALKVAYV EQKHQIALKF 240
  241 FSDGGAHALL FSNGNAEPMW KSSSPIEKWL DVQEKVEELI GDKIAARSPT IQPVNAAPVI 300
  301 AAPSNPLNNQ FEVQLVDLKS AMSYMLYKEI PRREEIRDEP LAALKQWMHT LKKYAPGTTP 360
  361 MRRLFFRLDE WIQLRSVVTA NEWTAKVDEI QQALGNPLPK EITWMACAGS KPNLRGYTCG 420
  421 LWTLAHTITV EAYKQEKHNT AFKPVIDVLE PFRAFIFHFL SCSECAQNFT KEAEKNQLHL 480
  481 VTRAEDVYAW LWRVHNFVNK RLSGSLTDDP SFKKQQFPPK SVCPDCYDSN GEIDEAKALP 540
  541 FVFKYYSNIK TDPAENVPGY KVVEYKEGKT LSAGQRHLNP KFQVHAGKVD QLEANEKVKN 600
  601 VLDASPQRTW KDIDGYDNIP ESSRTHWYFI WLSLIGVALI VVYCKYRKNR SKFWKTFYYQ 660
  661 NDFKLCPWSS SPVKQNIV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle