YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157769227
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAKSDSSE RVEIDGMYIL KVALIPLTLA ASILFLYLYV KPIEQQSATM LVAPKSRDMR  60
   61 AEQIRMFALN EIVKANSHDL PPRSRNISAK ALCKQKLACA PFNRRYETMI RVAPQYKMVN 120
  121 CVVQKSMSTM MTGAMCYLYN ETQYEKSGRS FDDEFSGRLC KNQNEFSSVN SVRDAFNISY 180
  181 VKHDWTFSMV TRNPIDRFVS GYVDRCVRLA LKNETQCNGC GLNMTCFIET EYKRLMEISY 240
  241 KRKTHRTMED AHFFPQVWHC GLNEEFEFFE FIQYSGNAED KMVPQLQDLL ERQNVPEKSI 300
  301 EFIKNELIYK KSSHSTTGTP AKRFYYSRLM KSPYLLEFIV KMFYYDFLRF HYELPPGF

Type	Start	End	Confidence
Cytoplasmic	1	17	0.93
Transmembrane Helix	18	40	0.92
Non-Cytoplasmic	41	358	0.97