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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39597744, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNRNVQLCS FLLVLNTAVF CEDTSNLAPV IIEHPLDVVV SRGSPATLNC GAKPSTAKIT  60
   61 WYKDGQPVIT NKEQVNSHRI VLDTGSLFLL KVNSGKNGKD SDAGAYYCVA SNEHGEVKSN 120
  121 EGSLRLAMLR EDFRVRPRTV QALGGEMAVL ECSPPRGFPE PVVSWRKDDK ELRIQDLPRY 180
  181 TLHSDGNLII DPVDRSDSGT YQCVANNMVG ERVSNPARLS VFEKPKFEQE PKDMTVDVGA 240
  241 AVLFDCRVTG DPQPQITWKR KNEPMPVTRA YIAKDNRGLR IERVQPSDEG EYVCYARNPA 300
  301 GTLEASAHLR VQAPPSFQTK PVDQSVPAGG TATFECALVG QPSPAYFWSK EGQQDLLFPS 360
  361 YVSADGRTKV SPTGTLTIEE VRQVDEGAYV CAGMNSAGSS LSKASLKVTT KAVTGNTPAK 420
  421 PPPTIEHGHQ NQTLMIASSA ILPCQASGKP TPGISWLRDG LPIDTTDSRI SQHSTGSLHI 480
  481 ADLKKPDTGV YTCIAKNEDG ESTWSASLTV EDHTSNAQFA RMPDPSNFPS APTQPIIVNV 540
  541 TDTEVELRWN APSTSGAGPI TGYIIQYYSP DLGQTWYNIP DYVATTEYRI KGLKPSHSYM 600
  601 FVIRAENEKG IGTPSVSSAL VTTGKAAAQV ALSDKNKMDM AIAEKRLTSE QLIKLEEVKT 660
  661 INSTAVRLFW KKRRVEELID GYYIKWRGPP RTNDNQYVNV TSPSTENFVV SNLMPFTNYE 720
  721 FFVIPYHSGV HSVHGAPSNS MDVLTAEAPP SLPPEDVRIR MLNLTTLRIS WKAPKADGIN 780
  781 GILKGFQIVI IGQAPNNNRN ITTNERAASV TLFHLVTGMT YKIRVAARSN GGVGVSHGTS 840
  841 EVTMNQDTLE KHLAAQQENE SFLYGWINKS HVPLIVIVAL LIIFVVIIIA YCYYRNSRNM 900
  901 DGKDRSFIKI NDGSVHMAAN NLWDVAQNQN QMYNTTGRMT MNNRNGGGQA LYSLTPNAQD 960
  961 FFNTCDDYSG TMHRPGSEHH YHYAQLTGGP GNAMSTFYGN QYHDDPSPYA TTTLVLSNQQ1020
 1021 PAWLNDKMLR APAMPTNPVP PEPPARYADQ TAGRRSRSSR ASDGRGTLNG GLHHRTSGSQ1080
 1081 RSDSPPHTDV SYVQLHSSDG TGSSKERTGE RRTPPNKTLM DMMPPPPSNP PPPGSHVYDT1140
 1141 ATRRQLNRGS TPREDTYDSV SDGAFARVDV NARPTSRNRN LGGRPLKGKR DDDSQRSSLM1200
 1201 MDDDGGSSEA DGENSEGDVP RGSGVRKNVP RMGISASTLA HSCYGNNGTS QRFRSIPRNN1260
 1261 GIVTQEQI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle