YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157769061
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNLQSKKQA FEVEHAKPFT LHCSLLMLVL LYSFLGGFVF DRIETDAHAE MKRNERTNRT  60
   61 SCVSQILHSV HRWSRNYTHQ EQLAEQIADC FEPEKDERSE WNFVTATLYG FGIVTTLGYN 120
  121 RIAPITYTGR MFCIVYGICG IPVTMIIIAN VGQYLNNFAG DSRRKIEAYR QQRRMSKASL 180
  181 AGKVYKESSI QVTSLALLCV FLAYVGVGAL LLPLLNGELD FFNGLYFNFL CLTAIDFGQL 240
  241 VPIRVELLPI TFLYVCIGLA ITTIAINIGS EYMKKLHYWG KKMKNAAQTR IWFGGKTLKV 300
  301 RDLLHAVGKK CGVEPGMIDA LDLENVVERT IAIQEGREPP EDLNDEPREP SPRSIIHSPC 360
  361 STRPSNPPMS PPSPREDHPF IFKMDTPAPR SPLPLPSYEL DIKKPIFQAL SNEFMNQSAQ 420
  421 EKLFDDLDTF HVELNTELVE DNKCESVIII EPPATFEDMT VQSSLNVEDY EKEEKAPKRF 480
  481 REKKEMYGRD PRKLYETYQE EWDRLERLSD RKHGPRRKSV LNLATCSPER SVSPSPIRHS 540
  541 LTGEDNRRNS

Type	Start	End	Confidence
Cytoplasmic	1	18	0.81
Transmembrane Helix	19	40	0.88
Non-Cytoplasmic	41	102	0.80
Transmembrane Helix	103	123	0.77
Cytoplasmic	124	131	0.66
Transmembrane Helix	132	152	0.92
Non-Cytoplasmic	153	191	0.78
Transmembrane Helix	192	215	0.89
Cytoplasmic	216	221	0.70
Transmembrane Helix	222	243	0.78
Non-Cytoplasmic	244	249	0.73
Transmembrane Helix	250	269	0.95
Cytoplasmic	270	550	0.89