YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157769039
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGIEHLLFL FTTFAFPPVA LTVLLCIILA TFGKSLGLRQ MYVDTLIHIF EWGARQIKTT  60
   61 EKIKRKESNV NSPFFINKLA EQEFEDHDDL RSLETPRFEA TEPITDDELD IRSETESHDS 120
  121 GEDFPSVDSD GDESCLKRKF GSTTSLASVG SCCNLRNRRS SESSTLGIIK RETQIYLDDN 180
  181 FADDIPDEVF VRSRGWAAIR DSVDFVKAGM EAIIEDEVTS RFEAEQLVSW NMLTRTSIKF 240
  241 YQFVNWKLSA LWIIGFLFRY CVMFPLRFTI FCIGLVFLIS STALIGLVPV GSWKKKLNHK 300
  301 CMLICYRILS RSLTAVVYFH DEHYKAERQG ICVANHTSPI DALILSIDNV YALIGQKHDG 360
  361 LLGIVQRALS RASSHIWFER SEAKDRYIVA QKLRQHCQDP EKLPILIFPE GTCINNTSVM 420
  421 MFKKGSFEIE TTIYPIAMKY DSRFGDAFWN SSEQSWCGYI MRMMTSWAII CNVWYLPPMT 480
  481 KRAGEDAVEF ANRVKKEISN KGGLVDLEWD GGLKRAKVPP KLVAKQQERY ANRLSRYTSV 540
  541 SEVVKNEDVE VALDLDKSVS GYNSLEDLPE DVFVDEEEEE DETFDASAEN IENEPDATIK 600
  601 NKLVDTASLV KL

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.87
Transmembrane Helix	8	32	0.85
Cytoplasmic	33	242	0.93
Transmembrane Helix	243	262	0.89
Non-Cytoplasmic	263	269	0.65
Transmembrane Helix	270	291	0.92
Cytoplasmic	292	612	0.71