YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2149907
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKISNENDI FKKRKPLPPK KSEESQPELT PWQKQNQEYL KKQAEEAASK GENEQAEVTI  60
   61 TLQEQSQEEP QQHLPQETVE EEEHFADRLP NVKKTRNKRL YRRLAFILTC LGTAILVALY 120
  121 FVSPLSRLSE VTVSGNKSVE SQAIIQQSKL ETGSGLWEQY SNRNYFSANI QKKFPIIKKA 180
  181 NIKLNGINSF KIDIQEYQIV ALAATKGGYH PILENGKTLA ETTKAAESGK PIFENFKEDK 240
  241 LIPELMASYN KLPQEIKQGI SEIKYAPSKT NKDLINVYMN DGNRVIVNIS DLSEKMAYYS 300
  301 QVAEQMDKPG IVDMEVGIFS YPYEKESEET GSEVSEDSAV ENQEVVDPNA GVATDVSRIT 360
  361 VHADKWRKSR SATSRISFLQ ECFKD

Type	Start	End	Confidence
Cytoplasmic	1	103	0.98
Transmembrane Helix	104	122	0.97
Non-Cytoplasmic	123	385	0.99